The accumulation of too much nitrate in aquaponic systems is sometimes a concern as fruiting plants set less fruit and produce excess vegetative growth when nitrate levels are high.
The filter tanks in the UVI commercial-scale system have a mechanism for controlling nitrate levels through denitrification, the reduction of nitrate ions to nitrogen gas by anaerobic bacteria. Large quantities of organic matter accumulate on the orchard netting between cleanings.
Denitrification occurs in anaerobic pockets that develop in the sludge. Water moves through the accumulated sludge, which provides good contact between nitrate ions and denitrifying bacteria.
The frequency of cleaning the netting regulates the degree of denitrification. When the netting is cleaned often (e.g., twice per week), sludge accumulation and denitrification are minimized, which leads to an increase in nitrate concentrations. When the netting is cleaned less often (e.g., once per week), sludge accumulation and denitrification are maximized, which leads to a decrease in nitrate levels. Nitrate-nitrogen levels can be regulated within a range of 1 to 100 mg/L or more.
High nitrate concentrations promote the growth of leafy green vegetables, while low nitrate concentrations promote fruit development in vegetables such as tomatoes.